rs11999260 chr9:125759194 C>T
- Sequence
agcactagtgtaaatatttgtaga[C/T]aaccatgttttacagacttcagtt
- ASB in cell types
- GM12890 (Lymphoblastoid Cell Lines) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 2.24 | 0.19 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP bipolar disorder, diastolic blood pressure (dbp), ldl cholesterol, longstanding arthritis, schizophrenia
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis