ADASTRA v5.1.3
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rs12023153
chr1:16056296
G
>
C
Sequence
ggccacattggacattgcaggcct[G/C]ggtctcttgtctcccacacacatc
ASB in cell types
Jurkat (T-cells)
T cells from peripheral blood
GM12878 (female B-cells lymphoblastoid cell line)
HMEC (human mammary epithelial cells)
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(+4 others)
ASB for transcription factors
STAG1_HUMAN
SMC1A_HUMAN
FOXK2_HUMAN
CREB1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN
0.66
0.37
1.00
1.8·10
-3
1.04
n/a
n/a
SMC1A_HUMAN
1.79
-0.02
3.9·10
-3
1.00
1.83
n/a
n/a
FOXK2_HUMAN
1.92
-3.47
0.01
1.00
1.50
n/a
n/a
CREB1_HUMAN
2.45
-2.34
0.03
1.00
1.25
n/a
No Hit
Items per page:
5
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL
Adipose_Subcutaneous
,
Adrenal_Gland
,
Brain_Anterior_cingulate_cortex_BA24
,
Brain_Caudate_basal_ganglia
,
Brain_Cerebellar_Hemisphere
,
Brain_Cerebellum
,
Brain_Cortex
,
Brain_Frontal_Cortex_BA9
,
Brain_Hippocampus
,
Brain_Hypothalamus
,
Brain_Nucleus_accumbens_basal_ganglia
,
Brain_Putamen_basal_ganglia
,
Brain_Spinal_cord_cervical_c-1
,
Brain_Substantia_nigra
,
Cells_Cultured_fibroblasts
,
Colon_Sigmoid
,
Esophagus_Mucosa
,
Heart_Atrial_Appendage
,
Heart_Left_Ventricle
,
Muscle_Skeletal
,
Nerve_Tibial
,
Pancreas
,
Pituitary
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Stomach
,
Thyroid
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)