rs12025085 chr1:225767970 G>A

Sequence
ttgtgcttgtggtggaagctccaa[G/A]gtcagggctggcctagagctcagt
ASB in cell types
HepG2 (hepatoblastoma) BEAS-2B (bronchial epithelium) HCASMC (Human coronary artery smooth muscle cells)
ASB for transcription factors
GCR_HUMAN TEAD1_HUMAN P66A_HUMAN ETV5_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GCR_HUMAN 1.99 0.35 2.7·10-191.00 1.93 n/a No Hit
TEAD1_HUMAN 3.65 -3.64 1.8·10-51.00 1.00 n/a No Hit
P66A_HUMAN 3.46 -3.45 4.2·10-41.00 1.00 n/a n/a
ETV5_HUMAN 3.12 n/a 1.5·10-31.00 1.50 n/a No Hit
SP130_HUMAN 2.68 -2.33 1.6·10-31.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  height,  ldl cholesterol change with statins,  sporadic creutzfeldt-jakob disease,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Muscle_Skeletal,  Ovary,  Spleen

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