rs12027467 chr1:162800447 C>T
- Sequence
ccgcctagtgtttgtcatagcaga[C/T]gtttataggacagtcaagtagtta
- ASB in cell types
- bipolar neuron THP-1 (acute monocytic leukemia) HeLa (cervical adenocarcinoma) GBM39 (Human brain tumor)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.84 | 0.13 | 1.59 | n/a | No Hit | |||
| RAD21_HUMAN | 1.57 | 0.44 | 1.92 | n/a | n/a | |||
| STAG1_HUMAN | 2.19 | -1.85 | 1.00 | n/a | n/a |
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