ADASTRA v5.1.3
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rs12031912
chr1:204506985
A
>
G
Sequence
tcagaacatggtgttatacaccat[A/G]atgtgtacaatttgtatttgttca
ASB in cell types
LNCaP (prostate carcinoma)
HCASMC (Human coronary artery smooth muscle cells)
ASB for transcription factors
FOXA1_HUMAN
TCF21_HUMAN
REQU_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN
-0.00
1.44
1.00
1.6·10
-6
1.66
n/a
No Hit
TCF21_HUMAN
2.93
-5.44
2.2·10
-3
1.00
2.00
n/a
n/a
REQU_HUMAN
-1.70
2.26
1.00
0.04
1.00
n/a
n/a
Items per page:
5
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GRASP
college completion
,
diastolic blood pressure (dbp)
,
infant head circumference
,
rheumatoid arthritis
,
triglycerides
,
years of education
GTEx eQTL
Esophagus_Gastroesophageal_Junction
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)