rs12053454 chr2:209208339 T>C
- Sequence
tcttagcgcgccccctatggccac[T/C]agggagaaaattaaaactaactaa
- ASB in cell types
- foreskin keratinocyte CD34+ stem cells-derived erythroblasts erythroid progenitors GM19239 (male B-cells lymphoblastoid cell line)
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 0.19 | 0.69 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.81 | 1.16 | 1.34 | 0.83 | Weak Concordant |
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Motif analysis
