rs12060189 chr1:40694609 A>G

Sequence
ctataacttagtttcgtttttagt[A/G]agactagacaaggtgataaaaatg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
ZN217_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN217_HUMAN 2.49 -2.22 0.041.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  body mass index (bmi),  hdl cholesterol,  tardive dyskinesia
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Breast_Mammary_Tissue,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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