rs12061116 chr1:32893000 G>C
- Sequence
gcatactgttccccgcccctctgg[G/C]cccagctgcctctggccctccagc
- ASB in cell types
- HCT-116 (colon carcinoma) VCaP (prostate carcinoma) ID00014 (lymphoblastoid cell, DiGeorge syndrome) GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- STAG1_HUMAN PO2F1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 1.87 | 0.36 | 1.00 | n/a | n/a | |||
| PO2F1_HUMAN | -3.10 | 3.27 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid, Whole_Blood