rs12063304 chr1:24745177 A>G
- Sequence
cccaccaaggccacgccccctacc[A/G]gctgtggggcgccgcagaggtcct
- ASB in cell types
- GM12892 (female B-cells lymphoblastoid cell line) monocytes from periferal blood SNU175 (adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN SRBP2_HUMAN TFAP4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.20 | 3.07 | 1.22 | 6.01 | Concordant | |||
| SRBP2_HUMAN | 2.41 | n/a | 3.00 | n/a | No Hit | |||
| TFAP4_HUMAN | 2.79 | -4.74 | 1.50 | -5.81 | Concordant |
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Motif analysis
