rs12091564 chr1:146039391 A>G

Sequence
aatgattccatataagaagacgcc[A/G]gtaatcagtgcccggctagctcag
ASB in cell types
HepG2 (hepatoblastoma) CD14+ monocytes GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma)
ASB for transcription factors
STAT1_HUMAN ANDR_HUMAN HDAC2_HUMAN FOXK2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 2.57 n/a 1.1·10-41.00 3.00 n/a No Hit
ANDR_HUMAN 3.17 n/a 2.2·10-31.00 2.00 n/a No Hit
HDAC2_HUMAN -2.71 2.93 1.003.5·10-3 1.00 n/a n/a
FOXK2_HUMAN 2.58 -4.53 4.4·10-31.00 1.50 n/a n/a
TCF21_HUMAN 2.17 n/a 0.021.00 3.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP college completion,  microalbuminuria,  triglycerides,  years of education
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid

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