rs12124177 chr1:179081800 C>T
- Sequence
cgaaagtcctagcggagtgattga[C/T]agtggccatttcaaagcctgagtt
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) 22RV1 (prostate carcinoma) HEK293T (embryonic kidney)
- ASB for transcription factors
- MEIS2_HUMAN ANDR_HUMAN CLOCK_HUMAN PRD10_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEIS2_HUMAN | n/a | 1.88 | 3.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.33 | -1.38 | 2.00 | n/a | No Hit | |||
| CLOCK_HUMAN | 2.66 | -1.87 | 2.00 | n/a | No Hit | |||
| PRD10_HUMAN | 2.23 | -0.51 | 2.50 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid