rs12133079 chr1:160046674 C>A
- Sequence
tatctgctgctcccagctgttgtg[C/A]cacctcccacagccaggcagcttt
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) definitive endoderm from HUES8 embryonic stem cells derived definitive endoderm
- ASB for transcription factors
- MTG16_HUMAN KDM1A_HUMAN C2D1A_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MTG16_HUMAN | n/a | 1.11 | 6.00 | n/a | n/a | |||
| KDM1A_HUMAN | -1.66 | 3.15 | 3.00 | n/a | n/a | |||
| C2D1A_HUMAN | n/a | 3.71 | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | n/a | 3.67 | 2.00 | n/a | n/a | |||
| ENL_HUMAN | n/a | 3.44 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood