rs12140351 chr1:16905240 C>T
- Sequence
tgttatggttatcaaagtggttta[C/T]tgtaaggctgagggctatgcattc
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- CTCF_HUMAN CDK9_HUMAN SPT5H_HUMAN NC2A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.64 | 0.01 | 1.61 | n/a | No Hit | |||
| CDK9_HUMAN | 3.74 | n/a | 1.50 | n/a | n/a | |||
| SPT5H_HUMAN | 1.61 | n/a | 3.50 | n/a | n/a | |||
| NC2A_HUMAN | 3.44 | -3.79 | 1.00 | n/a | n/a | |||
| ZN316_HUMAN | 1.28 | n/a | 4.00 | n/a | n/a |
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