rs12140356 chr1:16905248 C>T
- Sequence
ttatcaaagtggtttactgtaagg[C/T]tgagggctatgcattctatggcta
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) LNCaP (prostate carcinoma) tibial nerve
- ASB for transcription factors
- SPT5H_HUMAN EP300_HUMAN ZN316_HUMAN TBP_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPT5H_HUMAN | 2.15 | n/a | 5.00 | n/a | n/a | |||
| EP300_HUMAN | 1.83 | n/a | 1.67 | n/a | n/a | |||
| ZN316_HUMAN | 1.85 | n/a | 4.00 | n/a | n/a | |||
| TBP_HUMAN | -1.81 | 2.88 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 1.64 | -0.46 | 1.50 | n/a | No Hit |
Items per page:
1 – 5 of 23