rs12143590 chr1:12056445 A>G
- Sequence
gagattacagatgtgagtcaccgc[A/G]ctcggcttttcttggacttttact
- ASB in cell types
- K562 (myelogenous leukemia) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- REQU_HUMAN HDAC2_HUMAN RING2_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| REQU_HUMAN | 2.66 | -1.64 | 1.00 | n/a | n/a | |||
| HDAC2_HUMAN | 2.90 | -2.88 | 1.00 | n/a | n/a | |||
| RING2_HUMAN | 2.94 | -3.02 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.53 | -0.18 | 1.00 | n/a | No Hit | |||
| JUND_HUMAN | 2.52 | n/a | 1.33 | n/a | No Hit |
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