rs12146493 chr11:65779862 G>A
- Sequence
cagttggggagaccttatccgtga[G/A]cagtccccccaggccagccccaac
- ASB in cell types
- HEK293 (embryonic kidney) VCaP (prostate carcinoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- SCRT2_HUMAN ZBT26_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SCRT2_HUMAN | 1.96 | -1.96 | 1.00 | n/a | n/a | |||
| ZBT26_HUMAN | 2.56 | n/a | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, infant head circumference, ldl cholesterol, myocardial infarction (mi), total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood