rs12148482 chr15:98953111 G>T

Sequence
cttgaaacctctgccgggtcccag[G/T]tgagaaagtgtgtgagttgtgtgg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN SPT5H_HUMAN CTCF_HUMAN TRI22_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.62 -4.84 0.021.00 2.00 n/a No Hit
SPT5H_HUMAN -0.58 1.69 1.000.02 1.00 n/a n/a
CTCF_HUMAN 1.36 -0.21 0.021.00 1.00 n/a No Hit
TRI22_HUMAN 2.56 0.54 0.021.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  hdl cholesterol change with statins,  stabilized warfarin dose
GTEx eQTL Adipose_Subcutaneous,  Brain_Cerebellum,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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