rs12154 chr1:28236165 A>G
- Sequence
tgcttgctgcggcagagacgccag[A/G]ggtgcagctccagcagcaatggca
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) upper lobe of left lung HepG2 (hepatoblastoma)
- ASB for transcription factors
- CTCF_HUMAN PRD10_HUMAN HIC1_HUMAN ZIC2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.22 | 1.63 | 1.20 | n/a | No Hit | |||
| PRD10_HUMAN | -1.39 | 2.15 | 1.50 | n/a | n/a | |||
| HIC1_HUMAN | n/a | 2.83 | 2.00 | n/a | No Hit | |||
| ZIC2_HUMAN | n/a | 2.39 | 2.00 | n/a | n/a | |||
| EGR1_HUMAN | 0.22 | 2.15 | 1.12 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood