rs12237222 chr9:83219828 G>T
- Sequence
ctgcttcttgtgggtttcccactg[G/T]ggggcagcctcgtccttcgctcct
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) GM18486 (Lymphoblastoid Cell Lines) glioblastoma patient-derived cell model LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN ELF1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.43 | -0.48 | 2.19 | -5.34 | Concordant | |||
| RAD21_HUMAN | 2.68 | 0.46 | 2.25 | n/a | n/a | |||
| STAG1_HUMAN | 4.55 | n/a | 3.50 | n/a | n/a | |||
| ELF1_HUMAN | 3.12 | -5.64 | 2.00 | n/a | No Hit | |||
| CHD8_HUMAN | 2.09 | -0.57 | 1.00 | n/a | n/a |
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Motif analysis
