rs12248553 chr10:38529213 T>G
- Sequence
aacacaatggaatggactcgaatg[T/G]aatggaatggattggaatggacta
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) A549 (lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN EP300_HUMAN CENPA_HUMAN MCM3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.18 | 1.63 | 2.51 | n/a | No Hit | |||
| EP300_HUMAN | -0.02 | 1.94 | 3.12 | n/a | n/a | |||
| CENPA_HUMAN | -0.27 | 1.18 | 3.00 | n/a | n/a | |||
| MCM3_HUMAN | n/a | 3.71 | 3.00 | n/a | n/a | |||
| KDM1A_HUMAN | -1.26 | 2.59 | 2.50 | n/a | n/a |
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