rs12251572 chr10:38527602 A>T
- Sequence
tggacccaatgggatggaatctaa[A/T]ggaatggaatggaatggactcgaa
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CENPA_HUMAN CTCF_HUMAN LMNA_HUMAN IKZF1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CENPA_HUMAN | n/a | 2.84 | 3.00 | n/a | n/a | |||
| CTCF_HUMAN | -0.33 | 2.20 | 3.16 | n/a | No Hit | |||
| LMNA_HUMAN | n/a | 2.69 | 3.00 | n/a | n/a | |||
| IKZF1_HUMAN | -0.61 | 2.40 | 2.30 | n/a | No Hit | |||
| EP300_HUMAN | -0.78 | 2.57 | 2.60 | n/a | n/a |
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