rs12267352 chr10:80029399 T>G
- Sequence
cttagctcagaggtacaaacagga[T/G]gtttgtctagagctgccctctcct
- ASB in cell types
- WA01 (H1, human embryonic stem cells) GM23338 HMEC (human mammary epithelial cells) GM19239 (male B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN SMC1A_HUMAN RAD21_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.90 | 0.46 | 2.10 | n/a | No Hit | |||
| SMC1A_HUMAN | 3.50 | n/a | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 2.14 | 0.01 | 1.33 | n/a | n/a | |||
| STAG1_HUMAN | 1.73 | n/a | 4.75 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid