rs12273892 chr11:64713458 A>T
- Sequence
agccgcaggcggccgtccaccagc[A/T]gcagctccaggaagtcgcagtcgc
- ASB in cell types
- HEK293 (embryonic kidney) VCaP (prostate carcinoma)
- ASB for transcription factors
- ZBT26_HUMAN SUMO2_HUMAN MBL2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT26_HUMAN | -3.19 | 3.59 | 1.00 | n/a | n/a | |||
| SUMO2_HUMAN | -0.52 | 2.13 | 3.00 | n/a | n/a | |||
| MBL2_HUMAN | -4.38 | 2.35 | 3.00 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid