rs12281876 chr11:113289610 G>A
- Sequence
tccttgtgaccctggcacagcact[G/A]aaatcctttatatgcatctaccca
- ASB in cell types
- T47D (invasive ductal carcinoma) foreskin keratinocyte
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| T47D (invasive ductal carcinoma) | 0.13 | 0.97 | 2.00 | |||
| foreskin keratinocyte | 1.20 | n/a | 2.67 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood