rs12309 chr17:40019209 C>T
- Sequence
cacacacacacacacacacataca[C/T]actttgcatctagaaagttcctca
- ASB in cell types
- hTERT-HME1(Telomerase immortalized cell line) MCF10A (breast epithelial cells)
- ASB for transcription factors
- BRCA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRCA2_HUMAN | 1.45 | -1.20 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP asthma (childhood asthma), comorbid depressive syndrome and alcohol dependence, hdl cholesterol, ldl cholesterol, multiple myeloma, total cholesterol