rs12333427 chr7:146128478 A>G

Sequence
ttctcaaataaaagcttaatattt[A/G]cccaatattctactgccgtaaaat
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 2.65 -0.55 1.9·10-181.00 1.48 -1.31 Weak Concordant
ANDR_HUMAN 1.76 0.28 0.021.00 1.75 n/a No Hit
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Motif analysis

FOXA1_HUMAN Weak Concordant
FOXA1_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy),  birth weight,  hdl cholesterol,  triglycerides

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