rs12367271 chr12:132154482 A>G

Sequence
ccccgaggagcgcatgccctctga[A/G]atacaggtgttgccgccatccccg
ASB in cell types
SU-DHL-2 (anaplastic large cell lymphoma)
ASB for transcription factors
ITF2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ITF2_HUMAN 1.91 -0.83 0.041.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP homa-ir,  total cholesterol change with statins,  triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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