rs12371668 chr12:69821780 C>T
- Sequence
gtggagctgagtgactccacctgt[C/T]gggtggctacacccttgctcaggg
- ASB in cell types
- RH4 (alveolar rhabdomyosarcoma) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- MYOD1_HUMAN TCF21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MYOD1_HUMAN | n/a | 2.65 | 3.50 | 0.17 | Weak Concordant | |||
| TCF21_HUMAN | 1.68 | n/a | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood