rs12402050 chr1:147851425 T>C

Sequence
tgagtcattttaatcagtccactt[T/C]ctgccagtagctcagagtcctctt
ASB in cell types
K562 (myelogenous leukemia) BEAS-2B (bronchial epithelium) A-673 clone Asp114 (Ewing sarcoma) CAR-T cells
ASB for transcription factors
ATF3_HUMAN ARI1B_HUMAN COT1_HUMAN TIF1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF3_HUMAN n/a 2.28 1.001.9·10-8 2.00 n/a No Hit
ARI1B_HUMAN n/a 3.20 1.001.6·10-6 2.00 n/a n/a
COT1_HUMAN n/a 3.62 1.001.6·10-5 2.00 n/a No Hit
TIF1A_HUMAN -4.76 2.67 1.001.1·10-3 2.00 n/a n/a
EMSY_HUMAN n/a 3.00 1.002.6·10-3 2.00 n/a n/a
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Motif analysis

FLI1_HUMAN Concordant
FLI1_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration,  advanced age-related macular degeneration (choroidal neovascularization) vs. no amd,  body mass index (bmi),  cystatin c in serum

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