rs12405639 chr1:232123011 G>A
- Sequence
tgccctgctcttgtttacactgcc[G/A]gtttacactgtttttccaagccgt
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.85 | -1.10 | 1.75 | 1.65 | Weak Discordant |
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Motif analysis
