rs12408245 chr1:31509245 T>C
- Sequence
ctccagcttcaatggcttcctgcc[T/C]gccaccatctgctacaccatgggc
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) RCH-ACV (B acute lymphoblastic leukemia with t(1;19)(q23;p13.3) E2A-PBX1 (TCF3-PBX1))
- ASB for transcription factors
- EP300_HUMAN CDK9_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EP300_HUMAN | 0.31 | 1.75 | 1.07 | n/a | n/a | |||
| CDK9_HUMAN | -0.54 | 1.90 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Colon_Transverse, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid, Whole_Blood