rs12409135 chr1:31509309 G>A
- Sequence
ctaggggttggggttgaagaggaa[G/A]caggaaacctcacactcatttgag
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) HepG2 (hepatoblastoma) RCC 7860 (Renal cell carcinoma)
- ASB for transcription factors
- IKZF1_HUMAN ELF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 0.96 | -0.75 | 1.00 | n/a | No Hit | |||
| ELF1_HUMAN | 1.12 | -1.12 | 1.00 | -1.92 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Colon_Transverse, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid, Whole_Blood