rs12415 chr2:231708582 T>C
- Sequence
attgttcctcatccgcctccttgc[T/C]cgccgcagccgcctccgccgcgcg
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells lymphoblastoid cell line) CD14+ monocytes MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- JUN_HUMAN BCL3_HUMAN SPT5H_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 2.12 | -0.19 | 2.14 | n/a | No Hit | |||
| BCL3_HUMAN | 2.26 | -0.13 | 2.36 | n/a | n/a | |||
| SPT5H_HUMAN | 0.92 | -0.38 | 1.00 | n/a | n/a | |||
| STAT1_HUMAN | 3.54 | 0.68 | 1.50 | n/a | No Hit | |||
| PKNX1_HUMAN | 2.57 | -2.25 | 1.00 | n/a | No Hit |
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