rs12429081 chr13:49597453 G>C
- Sequence
ggaacatcttatctgtgacagtct[G/C]tccagtgtagattacagtttgcag
- ASB in cell types
- CD34+ hematopoietic stem cells-derived proerythroblasts 22RV1 (prostate carcinoma) LNCaP (prostate carcinoma) LNCaP95
- ASB for transcription factors
- ANDR_HUMAN GATA1_HUMAN TAL1_HUMAN GATA2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.75 | -0.21 | 1.87 | n/a | No Hit | |||
| GATA1_HUMAN | 2.27 | n/a | 3.33 | -1.36 | Weak Concordant | |||
| TAL1_HUMAN | 2.56 | -4.79 | 2.00 | -1.64 | Weak Concordant | |||
| GATA2_HUMAN | 1.57 | -0.18 | 1.50 | -1.15 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood