rs12440892 chr15:98933789 C>T

Sequence
ccagagccctggaaacgcctctgc[C/T]cgtccgctgcctaattgcctgtcc
ASB for transcription factors
PAX2_HUMAN
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View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PAX2_HUMAN 2.11 -4.19 1.4·10-31.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol,  total cholesterol
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Nucleus_accumbens_basal_ganglia,  Muscle_Skeletal,  Nerve_Tibial,  Thyroid

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