rs12441850 chr15:65300564 T>C
- Sequence
cgcacggagcagtagcagcagcaa[T/C]agcaagttactgcaaacagcaaaa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MOLT-4 (Adult T acute lymphoblastic leukemia) HepG2 (hepatoblastoma) GM02630 (Fanconi anemi)
- ASB for transcription factors
- BRD4_HUMAN SKIL_HUMAN IKZF1_HUMAN SPT5H_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 2.10 | -0.70 | 1.80 | n/a | n/a | |||
| SKIL_HUMAN | 3.14 | -3.48 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | 3.11 | n/a | 1.75 | n/a | No Hit | |||
| SPT5H_HUMAN | 1.43 | -1.59 | 1.47 | n/a | n/a | |||
| MTA2_HUMAN | 2.86 | -5.08 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood