rs12449680 chr17:78137665 A>G
- Sequence
ccctcacaggaggctaagggaagg[A/G]agggccggggtggccgtgagtggt
- ASB in cell types
- K562 (myelogenous leukemia) HT1080 (fibrosarcoma)
- ASB for transcription factors
- STAG1_HUMAN ZN316_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 1.52 | -0.07 | 1.08 | n/a | n/a | |||
| ZN316_HUMAN | 3.08 | -5.59 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Colon_Transverse, Esophagus_Mucosa, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood