rs12465763 chr2:128746533 T>G
- Sequence
atagcaacagggttagcctcagtg[T/G]ttttgagcacggacctcaacagtt
- ASB in cell types
- MCF10A (breast epithelial cells) iPS-derived dermal fibroblasts
- ASB for transcription factors
- P63_HUMAN NCOA3_HUMAN RARA_HUMAN TEAD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| P63_HUMAN | -0.43 | 1.64 | 1.12 | n/a | No Hit | |||
| NCOA3_HUMAN | -1.40 | 1.40 | 1.00 | n/a | n/a | |||
| RARA_HUMAN | 1.21 | -0.91 | 1.00 | n/a | No Hit | |||
| TEAD4_HUMAN | -1.66 | 1.66 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), aortic valve calcium, hdl cholesterol