rs12477674 chr2:50606999 G>A
- Sequence
tttttctgggtggacagtaggggt[G/A]gtggtggtattttcagtgttattg
- ASB in cell types
- foreskin keratinocyte pancreas MS-1 (Small cell lung carcinoma) glioblastoma cells
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.30 | 2.31 | 1.58 | 1.34 | Weak Concordant | |||
| RAD21_HUMAN | -0.28 | 2.08 | 2.08 | n/a | n/a |
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Motif analysis
