rs12479940 chr20:50461014 T>A
- Sequence
gaggatgaggacgtaccttccggg[T/A]gtttaatccagactagttgggaat
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma) THP-1 (acute monocytic leukemia) neutrophils from periferal blood
- ASB for transcription factors
- STAT1_HUMAN RAD21_HUMAN SMC1A_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.12 | -0.36 | 1.67 | n/a | No Hit | |||
| RAD21_HUMAN | 0.58 | 0.96 | 1.21 | n/a | n/a | |||
| SMC1A_HUMAN | 1.24 | -0.18 | 1.60 | n/a | n/a |
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