rs12481122 chr20:49979129 C>A
- Sequence
cctgaaaagcacgtgccccctgca[C/A]cccgcgacgattgcagggaggcgc
- ASB in cell types
- HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma) foreskin keratinocyte neutrophils from periferal blood
- ASB for transcription factors
- MAX_HUMAN MNT_HUMAN CTCF_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MAX_HUMAN | 0.05 | 1.50 | 1.47 | n/a | No Hit | |||
| MNT_HUMAN | -2.01 | 2.60 | 2.17 | n/a | n/a | |||
| CTCF_HUMAN | 1.03 | 1.11 | 1.74 | -0.39 | Weak Discordant | |||
| RAD21_HUMAN | 0.35 | 1.04 | 1.64 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid