rs12485529 chr3:182716738 A>G

Sequence
ccatgactactgagtttgtttgat[A/G]cctgcaagccatttaaatggattg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) GM02630 (Fanconi anemi)
ASB for transcription factors
FOXK2_HUMAN ELF1_HUMAN ATF7_HUMAN PRD10_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXK2_HUMAN 2.37 -2.14 1.4·10-41.00 1.00 n/a n/a
ELF1_HUMAN 2.87 -2.94 2.1·10-31.00 1.00 n/a No Hit
ATF7_HUMAN 2.71 -2.40 2.9·10-31.00 1.00 n/a n/a
PRD10_HUMAN 1.36 n/a 0.021.00 2.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol,  total cholesterol,  triglycerides,  triglycerides change with statins
GTEx eQTL Esophagus_Mucosa,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach

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