rs1248889 chr10:77939530 G>A

Sequence
tccttttctccatgtagccattgc[G/A]gtaccaccattccacactgaggct
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
NR2C1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NR2C1_HUMAN -2.43 2.54 1.000.02 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP hip bone mineral density (bmd),  irritible bowel syndrome,  schizophrenia,  years of education
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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