rs12503122 chr4:10117007 T>C

Sequence
tcccccgccggccccggccccgcc[T/C]ccgccttgctcgccccgccccgga
ASB in cell types
renal cortex SEM (childhood B acute lymphoblastic leukemia)
ASB for transcription factors
CREB1_HUMAN NRF1_HUMAN ERG_HUMAN RFOX2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CREB1_HUMAN 2.69 -0.21 6.7·10-51.00 1.50 n/a No Hit
NRF1_HUMAN 2.26 -4.84 6.6·10-41.00 2.00 -2.20 Concordant
ERG_HUMAN 1.41 -1.09 3.7·10-31.00 1.25 n/a No Hit
RFOX2_HUMAN 2.17 -1.33 6.1·10-31.00 2.00 n/a n/a
GABP1_HUMAN 0.98 -2.18 0.021.00 1.33 n/a n/a
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Motif analysis

NRF1_HUMAN Concordant
NRF1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Thyroid,  Uterus,  Whole_Blood

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