rs12539310 chr7:101883499 A>T
- Sequence
ccccgtagcatgccagaggctatt[A/T]agaaatacaggggtcgggggcagg
- ASB in cell types
- 22RV1 (prostate carcinoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- ANDR_HUMAN ILF3_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 3.40 | n/a | 2.00 | n/a | No Hit | |||
| ILF3_HUMAN | 1.71 | -1.71 | 1.00 | n/a | n/a | |||
| FOXA1_HUMAN | 1.31 | -0.41 | 1.75 | n/a | No Hit |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, infant head circumference, refractive error