rs12564169 chr1:6486724 G>A
- Sequence
tcaccactacacggctgtcaaagc[G/A]cttttacactgattcccaggaagg
- ASB in cell types
- K562 (myelogenous leukemia) epidermal keratinocytes MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line)
- ASB for transcription factors
- STAG1_HUMAN ILF3_HUMAN SMCA5_HUMAN PKNX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 1.32 | 0.32 | 1.04 | n/a | n/a | |||
| ILF3_HUMAN | -1.50 | 2.02 | 1.00 | n/a | n/a | |||
| SMCA5_HUMAN | -2.46 | 2.80 | 1.00 | n/a | No Hit | |||
| PKNX1_HUMAN | -1.32 | 1.60 | 1.00 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Skin_Sun_Exposed_Lower_leg