rs12565129 chr1:85621604 A>C

Sequence
ataaatgtgaagaaattacccagc[A/C]aaagggcagaggcacaaataaatg
ASB in cell types
HEK293 (embryonic kidney)
ASB for transcription factors
ZSC22_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZSC22_HUMAN n/a 4.14 1.003.5·10-7 2.00 2.02 Concordant
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Motif analysis

ZSC22_HUMAN Concordant
ZSC22_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration,  advanced age-related macular degeneration (choroidal neovascularization) vs. no amd,  aortic valve calcium,  college completion,  prop taste detection threshold,  years of education
GTEx eQTL Artery_Tibial

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