rs1256925 chr1:201501942 C>T

Sequence
ggagatggaggttgcagtgagcag[C/T]gatcttgccactgcactccagcct
ASB in cell types
HEK293 (embryonic kidney) A549 (lung carcinoma)
ASB for transcription factors
ZN426_HUMAN ZNF34_HUMAN ZC11A_HUMAN ZN394_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN426_HUMAN n/a 2.93 1.007.3·10-7 2.00 n/a n/a
ZNF34_HUMAN n/a 2.86 1.006.5·10-5 2.00 n/a n/a
ZC11A_HUMAN n/a 3.69 1.001.3·10-4 2.00 n/a n/a
ZN394_HUMAN n/a 3.23 1.009.3·10-4 2.00 n/a No Hit
ZN555_HUMAN n/a 3.27 1.002.3·10-3 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Liver,  Lung,  Nerve_Tibial,  Thyroid,  Whole_Blood

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