rs125698 chr3:8663540 G>T
- Sequence
aagaaggcgtggttggcagtcggg[G/T]tcaggtgggggccacagcagtggg
- ASB in cell types
- GM12890 (Lymphoblastoid Cell Lines) iPS-derived chondrocytes
- ASB for transcription factors
- RARA_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RARA_HUMAN | 1.10 | -0.27 | 1.06 | n/a | No Hit | |||
| CTCF_HUMAN | 0.24 | 0.75 | 1.28 | -1.22 | Weak Discordant |
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Motif analysis
