rs12571567 chr10:62414690 C>T

Sequence
cttgtcttgcctttggctttcagc[C/T]gttttattatgatgtgtttaagtg
ASB in cell types
LNCaP (prostate carcinoma) foreskin keratinocyte
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.72 0.49 8.4·10-50.90 1.37 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP aortic valve calcium,  breast size (bra cup size in women),  hdl cholesterol,  refractive error,  triglycerides
GTEx eQTL Artery_Tibial,  Brain_Cortex,  Brain_Hippocampus,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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